Tinkerrr d37670bd3e Remove Arrow (#817)
* replace arrow

* format

* update changelog

* code-style

* fix bug

* fix 2

* fix 3

* fix 4

* change build timeout on Jenkinsfile
2019-12-25 15:34:51 +08:00

240 lines
7.0 KiB
C++

// Licensed to the Apache Software Foundation (ASF) under one
// or more contributor license agreements. See the NOTICE file
// distributed with this work for additional information
// regarding copyright ownership. The ASF licenses this file
// to you under the Apache License, Version 2.0 (the
// "License"); you may not use this file except in compliance
// with the License. You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing,
// software distributed under the License is distributed on an
// "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
// KIND, either express or implied. See the License for the
// specific language governing permissions and limitations
// under the License.
#include "unittest/utils.h"
#include "knowhere/adapter/VectorAdapter.h"
#include <gtest/gtest.h>
#include <memory>
#include <string>
#include <utility>
INITIALIZE_EASYLOGGINGPP
void
InitLog() {
el::Configurations defaultConf;
defaultConf.setToDefault();
defaultConf.set(el::Level::Debug, el::ConfigurationType::Format, "[%thread-%datetime-%level]: %msg (%fbase:%line)");
el::Loggers::reconfigureLogger("default", defaultConf);
}
void
DataGen::Init_with_default() {
Generate(dim, nb, nq);
}
void
DataGen::Generate(const int& dim, const int& nb, const int& nq) {
this->nb = nb;
this->nq = nq;
this->dim = dim;
GenAll(dim, nb, xb, ids, nq, xq);
assert(xb.size() == (size_t)dim * nb);
assert(xq.size() == (size_t)dim * nq);
base_dataset = generate_dataset(nb, dim, xb.data(), ids.data());
query_dataset = generate_query_dataset(nq, dim, xq.data());
}
knowhere::DatasetPtr
DataGen::GenQuery(const int& nq) {
xq.resize(nq * dim);
for (int i = 0; i < nq * dim; ++i) {
xq[i] = xb[i];
}
return generate_query_dataset(nq, dim, xq.data());
}
void
GenAll(const int64_t dim, const int64_t& nb, std::vector<float>& xb, std::vector<int64_t>& ids, const int64_t& nq,
std::vector<float>& xq) {
xb.resize(nb * dim);
xq.resize(nq * dim);
ids.resize(nb);
GenAll(dim, nb, xb.data(), ids.data(), nq, xq.data());
}
void
GenAll(const int64_t& dim, const int64_t& nb, float* xb, int64_t* ids, const int64_t& nq, float* xq) {
GenBase(dim, nb, xb, ids);
for (int64_t i = 0; i < nq * dim; ++i) {
xq[i] = xb[i];
}
}
void
GenBase(const int64_t& dim, const int64_t& nb, float* xb, int64_t* ids) {
for (auto i = 0; i < nb; ++i) {
for (auto j = 0; j < dim; ++j) {
// p_data[i * d + j] = float(base + i);
xb[i * dim + j] = drand48();
}
xb[dim * i] += i / 1000.;
ids[i] = i;
}
}
FileIOReader::FileIOReader(const std::string& fname) {
name = fname;
fs = std::fstream(name, std::ios::in | std::ios::binary);
}
FileIOReader::~FileIOReader() {
fs.close();
}
size_t
FileIOReader::operator()(void* ptr, size_t size) {
fs.read(reinterpret_cast<char*>(ptr), size);
return size;
}
FileIOWriter::FileIOWriter(const std::string& fname) {
name = fname;
fs = std::fstream(name, std::ios::out | std::ios::binary);
}
FileIOWriter::~FileIOWriter() {
fs.close();
}
size_t
FileIOWriter::operator()(void* ptr, size_t size) {
fs.write(reinterpret_cast<char*>(ptr), size);
return size;
}
knowhere::DatasetPtr
generate_dataset(int64_t nb, int64_t dim, const float* xb, const int64_t* ids) {
auto ret_ds = std::make_shared<knowhere::Dataset>();
ret_ds->Set(knowhere::meta::ROWS, nb);
ret_ds->Set(knowhere::meta::DIM, dim);
ret_ds->Set(knowhere::meta::TENSOR, xb);
ret_ds->Set(knowhere::meta::IDS, ids);
return ret_ds;
}
knowhere::DatasetPtr
generate_query_dataset(int64_t nb, int64_t dim, const float* xb) {
auto ret_ds = std::make_shared<knowhere::Dataset>();
ret_ds->Set(knowhere::meta::ROWS, nb);
ret_ds->Set(knowhere::meta::DIM, dim);
ret_ds->Set(knowhere::meta::TENSOR, xb);
return ret_ds;
}
void
AssertAnns(const knowhere::DatasetPtr& result, const int& nq, const int& k) {
auto ids = result->Get<int64_t*>(knowhere::meta::IDS);
for (auto i = 0; i < nq; i++) {
EXPECT_EQ(i, *((int64_t*)(ids) + i * k));
// EXPECT_EQ(i, *(ids->data()->GetValues<int64_t>(1, i * k)));
}
}
void
PrintResult(const knowhere::DatasetPtr& result, const int& nq, const int& k) {
auto ids = result->Get<int64_t*>(knowhere::meta::IDS);
auto dist = result->Get<float*>(knowhere::meta::DISTANCE);
std::stringstream ss_id;
std::stringstream ss_dist;
for (auto i = 0; i < nq; i++) {
for (auto j = 0; j < k; ++j) {
// ss_id << *(ids->data()->GetValues<int64_t>(1, i * k + j)) << " ";
// ss_dist << *(dists->data()->GetValues<float>(1, i * k + j)) << " ";
ss_id << *((int64_t*)(ids) + i * k + j) << " ";
ss_dist << *((float*)(dist) + i * k + j) << " ";
}
ss_id << std::endl;
ss_dist << std::endl;
}
std::cout << "id\n" << ss_id.str() << std::endl;
std::cout << "dist\n" << ss_dist.str() << std::endl;
}
void
Load_nns_graph(std::vector<std::vector<int64_t>>& final_graph, const char* filename) {
std::vector<std::vector<unsigned>> knng;
std::ifstream in(filename, std::ios::binary);
unsigned k;
in.read((char*)&k, sizeof(unsigned));
in.seekg(0, std::ios::end);
std::ios::pos_type ss = in.tellg();
size_t fsize = (size_t)ss;
size_t num = (size_t)(fsize / (k + 1) / 4);
in.seekg(0, std::ios::beg);
knng.resize(num);
knng.reserve(num);
int64_t kk = (k + 3) / 4 * 4;
for (size_t i = 0; i < num; i++) {
in.seekg(4, std::ios::cur);
knng[i].resize(k);
knng[i].reserve(kk);
in.read((char*)knng[i].data(), k * sizeof(unsigned));
}
in.close();
final_graph.resize(knng.size());
for (int i = 0; i < knng.size(); ++i) {
final_graph[i].resize(knng[i].size());
for (int j = 0; j < knng[i].size(); ++j) {
final_graph[i][j] = knng[i][j];
}
}
}
float*
fvecs_read(const char* fname, size_t* d_out, size_t* n_out) {
FILE* f = fopen(fname, "r");
if (!f) {
fprintf(stderr, "could not open %s\n", fname);
perror("");
abort();
}
int d;
fread(&d, 1, sizeof(int), f);
assert((d > 0 && d < 1000000) || !"unreasonable dimension");
fseek(f, 0, SEEK_SET);
struct stat st;
fstat(fileno(f), &st);
size_t sz = st.st_size;
assert(sz % ((d + 1) * 4) == 0 || !"weird file size");
size_t n = sz / ((d + 1) * 4);
*d_out = d;
*n_out = n;
float* x = new float[n * (d + 1)];
size_t nr = fread(x, sizeof(float), n * (d + 1), f);
assert(nr == n * (d + 1) || !"could not read whole file");
// shift array to remove row headers
for (size_t i = 0; i < n; i++) memmove(x + i * d, x + 1 + i * (d + 1), d * sizeof(*x));
fclose(f);
return x;
}
int* // not very clean, but works as long as sizeof(int) == sizeof(float)
ivecs_read(const char* fname, size_t* d_out, size_t* n_out) {
return (int*)fvecs_read(fname, d_out, n_out);
}