milvus/cpp/src/db/DBMetaImpl.cpp
Xu Peng 57dfdae3e3 feat(db): fix bug and add exception catch in meta operation
Former-commit-id: 6d33945997e7a528bc729efdad6076d6532f79b3
2019-04-28 18:44:25 +08:00

524 lines
19 KiB
C++

#include <sys/stat.h>
#include <unistd.h>
#include <sstream>
#include <iostream>
#include <boost/filesystem.hpp>
#include <chrono>
#include <fstream>
#include <sqlite_orm.h>
#include <easylogging++.h>
#include "DBMetaImpl.h"
#include "IDGenerator.h"
namespace zilliz {
namespace vecwise {
namespace engine {
namespace meta {
using namespace sqlite_orm;
inline auto StoragePrototype(const std::string& path) {
return make_storage(path,
make_table("Group",
make_column("id", &GroupSchema::id, primary_key()),
make_column("group_id", &GroupSchema::group_id, unique()),
make_column("dimension", &GroupSchema::dimension),
make_column("files_cnt", &GroupSchema::files_cnt, default_value(0))),
make_table("GroupFile",
make_column("id", &GroupFileSchema::id, primary_key()),
make_column("group_id", &GroupFileSchema::group_id),
make_column("file_id", &GroupFileSchema::file_id),
make_column("file_type", &GroupFileSchema::file_type),
make_column("rows", &GroupFileSchema::rows, default_value(0)),
make_column("updated_time", &GroupFileSchema::updated_time),
make_column("date", &GroupFileSchema::date))
);
}
using ConnectorT = decltype(StoragePrototype("/tmp/dummy.sqlite3"));
static std::unique_ptr<ConnectorT> ConnectorPtr;
long GetFileSize(const std::string& filename)
{
struct stat stat_buf;
int rc = stat(filename.c_str(), &stat_buf);
return rc == 0 ? stat_buf.st_size : -1;
}
std::string DBMetaImpl::GetGroupPath(const std::string& group_id) {
return _options.path + "/" + group_id;
}
long DBMetaImpl::GetMicroSecTimeStamp() {
auto now = std::chrono::system_clock::now();
auto micros = std::chrono::duration_cast<std::chrono::microseconds>(
now.time_since_epoch()).count();
return micros;
}
std::string DBMetaImpl::GetGroupDatePartitionPath(const std::string& group_id, DateT& date) {
std::stringstream ss;
ss << GetGroupPath(group_id) << "/" << date;
return ss.str();
}
void DBMetaImpl::GetGroupFilePath(GroupFileSchema& group_file) {
if (group_file.date == EmptyDate) {
group_file.date = Meta::GetDate();
}
std::stringstream ss;
ss << GetGroupDatePartitionPath(group_file.group_id, group_file.date)
<< "/" << group_file.file_id;
group_file.location = ss.str();
}
DBMetaImpl::DBMetaImpl(const DBMetaOptions& options_)
: _options(options_) {
initialize();
}
Status DBMetaImpl::initialize() {
if (!boost::filesystem::is_directory(_options.path)) {
assert(boost::filesystem::create_directory(_options.path));
}
ConnectorPtr = std::make_unique<ConnectorT>(StoragePrototype(_options.path+"/meta.sqlite"));
ConnectorPtr->sync_schema();
ConnectorPtr->open_forever(); // thread safe option
ConnectorPtr->pragma.journal_mode(journal_mode::WAL); // WAL => write ahead log
cleanup();
return Status::OK();
}
Status DBMetaImpl::add_group(GroupSchema& group_info) {
if (group_info.group_id == "") {
std::stringstream ss;
SimpleIDGenerator g;
ss << g.getNextIDNumber();
group_info.group_id = ss.str();
}
group_info.files_cnt = 0;
group_info.id = -1;
{
try {
auto id = ConnectorPtr->insert(group_info);
group_info.id = id;
LOG(DEBUG) << "Add group " << id;
} catch (...) {
return Status::DBTransactionError("Add Group Error");
}
}
auto group_path = GetGroupPath(group_info.group_id);
if (!boost::filesystem::is_directory(group_path)) {
assert(boost::filesystem::create_directory(group_path));
}
return Status::OK();
}
Status DBMetaImpl::get_group(GroupSchema& group_info) {
return get_group_no_lock(group_info);
}
Status DBMetaImpl::get_group_no_lock(GroupSchema& group_info) {
try {
auto groups = ConnectorPtr->select(columns(&GroupSchema::id,
&GroupSchema::group_id,
&GroupSchema::files_cnt,
&GroupSchema::dimension),
where(c(&GroupSchema::group_id) == group_info.group_id));
assert(groups.size() <= 1);
if (groups.size() == 1) {
group_info.id = std::get<0>(groups[0]);
group_info.files_cnt = std::get<2>(groups[0]);
group_info.dimension = std::get<3>(groups[0]);
} else {
return Status::NotFound("Group " + group_info.group_id + " not found");
}
} catch (std::exception &e) {
LOG(DEBUG) << e.what();
throw e;
}
return Status::OK();
}
Status DBMetaImpl::has_group(const std::string& group_id, bool& has_or_not) {
try {
auto groups = ConnectorPtr->select(columns(&GroupSchema::id),
where(c(&GroupSchema::group_id) == group_id));
assert(groups.size() <= 1);
if (groups.size() == 1) {
has_or_not = true;
} else {
has_or_not = false;
}
} catch (std::exception &e) {
LOG(DEBUG) << e.what();
throw e;
}
return Status::OK();
}
Status DBMetaImpl::add_group_file(GroupFileSchema& group_file) {
if (group_file.date == EmptyDate) {
group_file.date = Meta::GetDate();
}
GroupSchema group_info;
group_info.group_id = group_file.group_id;
auto status = get_group(group_info);
if (!status.ok()) {
return status;
}
SimpleIDGenerator g;
std::stringstream ss;
ss << g.getNextIDNumber();
group_file.file_type = GroupFileSchema::NEW;
group_file.file_id = ss.str();
group_file.dimension = group_info.dimension;
group_file.rows = 0;
group_file.updated_time = GetMicroSecTimeStamp(); //ConnectorPtr->select(datetime("now", "localtime +1 hour")).front();
GetGroupFilePath(group_file);
{
try {
auto id = ConnectorPtr->insert(group_file);
group_file.id = id;
LOG(DEBUG) << "Add group_file of file_id=" << group_file.file_id;
} catch (...) {
return Status::DBTransactionError("Add file Error");
}
}
auto partition_path = GetGroupDatePartitionPath(group_file.group_id, group_file.date);
if (!boost::filesystem::is_directory(partition_path)) {
assert(boost::filesystem::create_directory(partition_path));
}
return Status::OK();
}
Status DBMetaImpl::files_to_index(GroupFilesSchema& files) {
files.clear();
try {
auto selected = ConnectorPtr->select(columns(&GroupFileSchema::id,
&GroupFileSchema::group_id,
&GroupFileSchema::file_id,
&GroupFileSchema::file_type,
&GroupFileSchema::rows,
&GroupFileSchema::date),
where(c(&GroupFileSchema::file_type) == (int)GroupFileSchema::TO_INDEX));
std::map<std::string, GroupSchema> groups;
for (auto& file : selected) {
GroupFileSchema group_file;
group_file.id = std::get<0>(file);
group_file.group_id = std::get<1>(file);
group_file.file_id = std::get<2>(file);
group_file.file_type = std::get<3>(file);
group_file.rows = std::get<4>(file);
group_file.date = std::get<5>(file);
GetGroupFilePath(group_file);
auto groupItr = groups.find(group_file.group_id);
if (groupItr == groups.end()) {
GroupSchema group_info;
group_info.group_id = group_file.group_id;
auto status = get_group_no_lock(group_info);
if (!status.ok()) {
return status;
}
groups[group_file.group_id] = group_info;
}
group_file.dimension = groups[group_file.group_id].dimension;
files.push_back(group_file);
}
} catch (std::exception & e) {
LOG(DEBUG) << e.what();
throw e;
}
return Status::OK();
}
Status DBMetaImpl::files_to_search(const std::string &group_id,
std::vector<DateT> partition,
DatePartionedGroupFilesSchema &files) {
// TODO: support data partition
files.clear();
try {
auto selected = ConnectorPtr->select(columns(&GroupFileSchema::id,
&GroupFileSchema::group_id,
&GroupFileSchema::file_id,
&GroupFileSchema::file_type,
&GroupFileSchema::rows,
&GroupFileSchema::date),
where(c(&GroupFileSchema::group_id) == group_id and
(c(&GroupFileSchema::file_type) == (int) GroupFileSchema::RAW or
c(&GroupFileSchema::file_type) == (int) GroupFileSchema::INDEX)));
GroupSchema group_info;
group_info.group_id = group_id;
auto status = get_group_no_lock(group_info);
if (!status.ok()) {
return status;
}
for (auto& file : selected) {
GroupFileSchema group_file;
group_file.id = std::get<0>(file);
group_file.group_id = std::get<1>(file);
group_file.file_id = std::get<2>(file);
group_file.file_type = std::get<3>(file);
group_file.rows = std::get<4>(file);
group_file.date = std::get<5>(file);
group_file.dimension = group_info.dimension;
GetGroupFilePath(group_file);
auto dateItr = files.find(group_file.date);
if (dateItr == files.end()) {
files[group_file.date] = GroupFilesSchema();
}
files[group_file.date].push_back(group_file);
}
} catch (std::exception & e) {
LOG(DEBUG) << e.what();
throw e;
}
return Status::OK();
}
Status DBMetaImpl::files_to_merge(const std::string& group_id,
DatePartionedGroupFilesSchema& files) {
files.clear();
try {
auto selected = ConnectorPtr->select(columns(&GroupFileSchema::id,
&GroupFileSchema::group_id,
&GroupFileSchema::file_id,
&GroupFileSchema::file_type,
&GroupFileSchema::rows,
&GroupFileSchema::date),
where(c(&GroupFileSchema::file_type) == (int)GroupFileSchema::RAW and
c(&GroupFileSchema::group_id) == group_id));
GroupSchema group_info;
group_info.group_id = group_id;
auto status = get_group_no_lock(group_info);
if (!status.ok()) {
return status;
}
for (auto& file : selected) {
GroupFileSchema group_file;
group_file.id = std::get<0>(file);
group_file.group_id = std::get<1>(file);
group_file.file_id = std::get<2>(file);
group_file.file_type = std::get<3>(file);
group_file.rows = std::get<4>(file);
group_file.date = std::get<5>(file);
group_file.dimension = group_info.dimension;
GetGroupFilePath(group_file);
auto dateItr = files.find(group_file.date);
if (dateItr == files.end()) {
files[group_file.date] = GroupFilesSchema();
}
files[group_file.date].push_back(group_file);
}
} catch (std::exception & e) {
LOG(DEBUG) << e.what();
throw e;
}
return Status::OK();
}
Status DBMetaImpl::has_group_file(const std::string& group_id_,
const std::string& file_id_,
bool& has_or_not_) {
//PXU TODO
return Status::OK();
}
Status DBMetaImpl::get_group_file(const std::string& group_id_,
const std::string& file_id_,
GroupFileSchema& group_file_info_) {
//PXU TODO
return Status::OK();
}
Status DBMetaImpl::get_group_files(const std::string& group_id_,
const int date_delta_,
GroupFilesSchema& group_files_info_) {
// PXU TODO
return Status::OK();
}
Status DBMetaImpl::update_group_file(GroupFileSchema& group_file) {
group_file.updated_time = GetMicroSecTimeStamp();
try {
auto commited = ConnectorPtr->transaction([&] () mutable {
ConnectorPtr->update(group_file);
return true;
});
if (!commited) {
return Status::DBTransactionError("Update file Error");
}
} catch (std::exception & e) {
LOG(DEBUG) << e.what();
LOG(DEBUG) << "id= " << group_file.id << " file_id=" << group_file.file_id;
throw e;
}
return Status::OK();
}
Status DBMetaImpl::update_files(GroupFilesSchema& files) {
try {
auto commited = ConnectorPtr->transaction([&] () mutable {
for (auto& file : files) {
file.updated_time = GetMicroSecTimeStamp();
ConnectorPtr->update(file);
}
return true;
});
if (!commited) {
return Status::DBTransactionError("Update files Error");
}
} catch (std::exception & e) {
LOG(DEBUG) << e.what();
throw e;
}
return Status::OK();
}
Status DBMetaImpl::cleanup_ttl_files(uint16_t seconds) {
auto now = GetMicroSecTimeStamp();
try {
auto selected = ConnectorPtr->select(columns(&GroupFileSchema::id,
&GroupFileSchema::group_id,
&GroupFileSchema::file_id,
&GroupFileSchema::file_type,
&GroupFileSchema::rows,
&GroupFileSchema::date),
where(c(&GroupFileSchema::file_type) == (int)GroupFileSchema::TO_DELETE and
c(&GroupFileSchema::updated_time) > now - 1000000*seconds));
GroupFilesSchema updated;
for (auto& file : selected) {
GroupFileSchema group_file;
group_file.id = std::get<0>(file);
group_file.group_id = std::get<1>(file);
group_file.file_id = std::get<2>(file);
group_file.file_type = std::get<3>(file);
group_file.rows = std::get<4>(file);
group_file.date = std::get<5>(file);
GetGroupFilePath(group_file);
if (group_file.file_type == GroupFileSchema::TO_DELETE) {
boost::filesystem::remove(group_file.location);
}
ConnectorPtr->remove<GroupFileSchema>(group_file.id);
LOG(DEBUG) << "Removing deleted id=" << group_file.id << " location=" << group_file.location << std::endl;
}
} catch (std::exception & e) {
LOG(DEBUG) << e.what();
throw e;
}
return Status::OK();
}
Status DBMetaImpl::cleanup() {
try {
auto selected = ConnectorPtr->select(columns(&GroupFileSchema::id,
&GroupFileSchema::group_id,
&GroupFileSchema::file_id,
&GroupFileSchema::file_type,
&GroupFileSchema::rows,
&GroupFileSchema::date),
where(c(&GroupFileSchema::file_type) == (int)GroupFileSchema::TO_DELETE or
c(&GroupFileSchema::file_type) == (int)GroupFileSchema::NEW));
GroupFilesSchema updated;
for (auto& file : selected) {
GroupFileSchema group_file;
group_file.id = std::get<0>(file);
group_file.group_id = std::get<1>(file);
group_file.file_id = std::get<2>(file);
group_file.file_type = std::get<3>(file);
group_file.rows = std::get<4>(file);
group_file.date = std::get<5>(file);
GetGroupFilePath(group_file);
if (group_file.file_type == GroupFileSchema::TO_DELETE) {
boost::filesystem::remove(group_file.location);
}
ConnectorPtr->remove<GroupFileSchema>(group_file.id);
LOG(DEBUG) << "Removing id=" << group_file.id << " location=" << group_file.location << std::endl;
}
} catch (std::exception & e) {
LOG(DEBUG) << e.what();
throw e;
}
return Status::OK();
}
Status DBMetaImpl::count(const std::string& group_id, long& result) {
try {
auto selected = ConnectorPtr->select(columns(&GroupFileSchema::rows,
&GroupFileSchema::date),
where((c(&GroupFileSchema::file_type) == (int)GroupFileSchema::RAW or
c(&GroupFileSchema::file_type) == (int)GroupFileSchema::TO_INDEX or
c(&GroupFileSchema::file_type) == (int)GroupFileSchema::INDEX) and
c(&GroupFileSchema::group_id) == group_id));
GroupSchema group_info;
group_info.group_id = group_id;
auto status = get_group_no_lock(group_info);
if (!status.ok()) {
return status;
}
result = 0;
for (auto& file : selected) {
result += std::get<0>(file);
}
result /= group_info.dimension;
} catch (std::exception & e) {
LOG(DEBUG) << e.what();
throw e;
}
return Status::OK();
}
Status DBMetaImpl::drop_all() {
if (boost::filesystem::is_directory(_options.path)) {
boost::filesystem::remove_all(_options.path);
}
return Status::OK();
}
DBMetaImpl::~DBMetaImpl() {
cleanup();
}
} // namespace meta
} // namespace engine
} // namespace vecwise
} // namespace zilliz