[skip e2e] update nightly helm chart version and format wp config (#41559)

fix:
https://jenkins.milvus.io:18080/blue/organizations/jenkins/Milvus%20Nightly%20CI(new)/detail/master/332/pipeline/146

Signed-off-by: ThreadDao <yufen.zong@zilliz.com>

ci/jenkins/Nightly2.groovy

@@ -8,7 +8,7 @@ String cron_string = BRANCH_NAME == 'master' ? '50 4 * * * ' : ''
 // Make timeout 4 hours so that we can run two nightly during the ci
 int total_timeout_minutes = 7 * 60
 
-def milvus_helm_chart_version = '4.2.18'
+def milvus_helm_chart_version = '4.2.47'
 
 pipeline {
     triggers {

tests/_helm/values/nightly/distributed-woodpecker

@@ -1,73 +1,62 @@
 cluster:
   enabled: true
-streaming:
-  enabled: true
-streamingNode:
-  replicas: 2
-common:
-  security:
-    authorizationEnabled: false
-dataCoordinator:
-  gc:
-    dropTolerance: 86400
-    missingTolerance: 86400
-  profiling:
-    enabled: true
-dataNode:
-  profiling:
-    enabled: true
-  replicas: 2
+
+# dependencies
 etcd:
   metrics:
     enabled: true
     podMonitor:
       enabled: true
-image:
-  all:
-    pullPolicy: Always
-    repository: harbor.milvus.io/milvus/milvus
-    tag: nightly-20240821-ed4eaff
-indexCoordinator:
-  enabled: false
-  gc:
-    interval: 1
-  profiling:
-    enabled: true
-indexNode:
-  enabled: false
-  disk:
-    enabled: true
-  profiling:
-    enabled: true
-  replicas: 2
-woodpecker:
-  enabled: true
-log:
-  level: debug
-metrics:
-  serviceMonitor:
-    enabled: true
 minio:
   mode: standalone
+woodpecker:
+  enabled: true
+pulsarv3:
+  enabled: false
+
+# milvus components
 proxy:
   profiling:
     enabled: true
   replicas: 2
-pulsar:
-  enabled: false
-pulsarv3:
-  enabled: false
-queryCoordinator:
-  profiling:
-    enabled: true
 queryNode:
   disk:
     enabled: true
   profiling:
     enabled: true
   replicas: 2
+streaming:
+  enabled: true
+streamingNode:
+  replicas: 2
+mixCoordinator:
+  profiling:
+    enabled: true
+dataNode:
+  profiling:
+    enabled: true
+  replicas: 2
+indexNode:
+  enabled: false
+
+# others
+image:
+  all:
+    pullPolicy: Always
+    repository: harbor.milvus.io/milvus/milvus
+    tag: nightly-20240821-ed4eaff
+log:
+  level: debug
+metrics:
+  serviceMonitor:
+    enabled: true
 service:
   type: ClusterIP
-standalone:
-  disk:
-    enabled: true
+
+# milvus.yaml config
+extraConfigFiles:
+  user.yaml: |+
+    dataCoord:
+      gc:
+        dropTolerance: 86400
+        missingTolerance: 86400